Index

A

add_project_to_sys_path() (in module network_configs.connections.conn_utils) analysis_pred_utils module

analysis_utils module assign_positions_rect() (in module network_configs.connections.conn_utils)

B

bin_pos() (in module analysis_pred_utils) bin_spike_ms() (in module analysis_utils)

build_and_return_matrix() (in module analysis_utils) butter_lowpass() (in module analysis_pred_utils) butter_lowpass_filter() (in module analysis_pred_utils)

C

calc_bias_stell_intrnrn() (in module analysis_pred_utils) calc_fft() (in module analysis_utils) calc_field_size() (in module analysis_pred_utils) calc_firing_rates() (in module analysis_utils) calc_grid_field_sizes_time() (in module analysis_utils) calc_grid_scales_time() (in module analysis_utils) calc_inhib_g_at_first_and_last_spike() (in module analysis_pred_utils) calc_predictive_code() (in module analysis_pred_utils)

calc_speed_of_network() (in module analysis_pred_utils) (in module analysis_utils) calculate_field_positions() (in module analysis_pred_utils) check_sim_dup() (in module sim_utils) circular_convolve() (in module analysis_pred_utils) circular_difference() (in module analysis_pred_utils) clean_spikes() (in module analysis_utils) convole_field_pos() (in module analysis_pred_utils)

D

decode_pos() (in module analysis_utils)

decode_pos_by_intrnrn() (in module analysis_pred_utils)

F

file_args() (in module network_configs.connections.conn_utils) find_params() (in module network_configs.connections.conn_utils)

find_rates_of_fields() (in module analysis_pred_utils) find_sim_num() (in module sim_utils)

G

gaussian() (in module network_configs.connections.conn_utils) gaussian_2D() (in module network_configs.connections.conn_utils) generate_2d_video() (in module analysis_utils) generate_pulse_train() (in module network_configs.instrumentations.instr_utils) get_git_commit_hash() (in module sim_utils)

get_module_from_path() (in module sim_utils) get_multiples_with_remainder() (in module sim_utils) get_sim_num() (in module sim_utils) grid_field_sizes_neurons() (in module analysis_utils) grid_props_2D() (in module analysis_utils) grid_scale_neurons() (in module analysis_utils)

I

instant_rate() (in module analysis_utils) instant_rate_all() (in module analysis_utils)

instant_rate_low_pass() (in module analysis_pred_utils) integrate_array() (in module analysis_utils)

J

json_modify() (in module sim_utils)

json_read() (in module sim_utils) json_save() (in module sim_utils)

L

list_to_numpy() (in module sim_utils) load_data() (in module sim_utils) load_full_data() (in module sim_utils)

load_sim_params() (in module sim_utils) load_spikes() (in module sim_utils) locate_data_dir() (in module sim_utils) log_from_rank_0() (in module sim_utils)

M

module analysis_pred_utils analysis_utils network_configs.connections.conn_utils network_configs.instrumentations.instr_utils sim_utils

N

network_configs.connections.conn_utils module

network_configs.instrumentations.instr_utils module network_intialize() (in module sim_utils)

P

periodic_activity_all() (in module analysis_utils)

process_data_root() (in module sim_utils)

R

recursive_getattr() (in module network_configs.instrumentations.instr_utils)

remove_nodes_from_params() (in module sim_utils) remove_uneven_fields() (in module analysis_pred_utils)

S

separate_fields() (in module analysis_pred_utils) (in module analysis_utils) set_global_variables() (in module network_configs.instrumentations.instr_utils) set_intial_noise() (in module network_configs.instrumentations.instr_utils) set_intrnrn_range_variables() (in module network_configs.instrumentations.instr_utils) set_noise() (in module network_configs.instrumentations.instr_utils) set_stell_range_variables() (in module network_configs.instrumentations.instr_utils) setup_recorders() (in module network_configs.instrumentations.instr_utils)

shift_fields_to_center() (in module analysis_utils) signed_arc_length() (in module analysis_pred_utils) (in module network_configs.connections.conn_utils) sim_run_arg_parser() (in module sim_utils) sim_setup_arg_parser() (in module sim_utils) sim_utils module spks_to_rate_reshaped() (in module analysis_utils)

U

unsigned_arc_length() (in module network_configs.connections.conn_utils)